The orbit of Jupiter, the 25th century. Arriving back on the Nerva Beacon much earlier in history, the Doctor and his friends discover the satellite beset by space plague while its crew struggles to keep space traffic away from Voga, the newest moon of Jupiter. But what is the connection between Voga, the plague, and some old enemies of the Doctor?
The planet Skaro, the distant past. The Time Lords divert the Doctor, Sarah Jane and Harry to this war-torn world, and give the Doctor a mission: the evil of the Daleks is about to be born here, and the Doctor is to try to ensure they evolve into less lethally aggressive beings - or, failing that, to avert their creation altogether. But has even the Doctor the right to commit genocide?
The Doctor, Sarah Jane and Harry teleport to Earth to ensure the planet is safe for the survivors on board Nerva Beacon to return and reinhabit their world. A Sontaran named Styre has captured a group of humans and is conducting experiments on them to discover the human body's weaknesses, as part of the Sontaran's goal for domination of the galaxy.