In the two-hour Season Finale, the 11th Pilgrimage arrives in Terra Nova and the mysterious Phoenix Group in 2149 makes its move to pillage the past with the help of Lucas and Mira. Meanwhile, Jim and Taylor team up in a last stand against the Phoenix Group, a colonist makes the ultimate sacrifice and a decision is made that will change life in Terra Nova forever.
A crashing meteor wipes out all technology and wreaks havoc on the colony. Meanwhile, Maddy and Reynolds are stuck out in the wilderness, Elisabeth and Skye work together to save a life and Taylor tries to prevent Mira and the "Sixers" from invading Terra Nova. Also, a mystery man makes his presence known.
When Elisabeth, Jim, Malcolm and Taylor investigate radio silence at a nearby scientific outpost, they discover an outbreak of a mysterious virus causing memory loss, paranoia and eventually death. The group must work together to find a cure before they lose their sanity and all of Terra Nova is infected.
When Terra Nova comes under attack from a legion of Pterosaurs, Jim and Taylor must find a way to save the colony before it's completely overtaken. Elisabeth discovers a former flame is also living in Terra Nova and may have been responsible for her recruitment. Syke tries to make Josh feel at home and Reynolds get protective of Maddy.